APackOfTheClones - Visualization of Clonal Expansion for Single Cell Immune Profiles
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) <doi:10.1126/sciimmunol.abg6356>.
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clonal-analysisimmune-repertoireimmune-systemscrna-seqscrnaseqseuratsingle-cellsingle-cell-genomicscpp
6.06 score 21 stars 11 scripts 654 downloadseinops - Flexible, Powerful, and Readable Tensor Operations
Perform tensor operations using a concise yet expressive syntax inspired by the Python library of the same name. Reshape, rearrange, and combine multidimensional arrays for scientific computing, machine learning, and data analysis. Einops simplifies complex manipulations, making code more maintainable and intuitive. The original implementation is demonstrated in Rogozhnikov (2022) <https://openreview.net/forum?id=oapKSVM2bcj>.
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arraydeep-learningeinopstensor
4.95 score 3 stars 3 scripts 113 downloadsFastUtils - Fast, Readable Utility Functions
A wide variety of tools for general data analysis, wrangling, spelling, statistics, visualizations, package development, and more. All functions have vectorized implementations whenever possible. Exported names are designed to be readable, with longer names possessing short aliases.
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scientific-computingutilitiesutilitycpp
4.48 score 2 stars 1 dependents 2 scripts 145 downloads